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Página inicial / Arabidopsis Thaliana Ring/fyve/phd-type Zinc Finger Family Protein Mrna

Arabidopsis Thaliana Ring/fyve/phd-type Zinc Finger Family Protein Mrna

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Locus: AT3G43230

Representative Gene Model (?)
AT3G43230.1
Gene Model Type protein_coding
Other names:

Description (?) RING/FYVE/PHD-type zinc finger family poly peptide;(source:Araport11)
Map Detail Image

Center on AT3G43230 | Total-screen view

Annotations (?)
category human relationship type (?) keyword (?)
Go Biological Process acts upstream of or inside defence response to other organism, leaf development, leaf senescence, oxoacid metabolic process, response to abscisic acid, response to inorganic substance, bespeak transduction
Go Cellular Component located in cytoplasm
GO Molecular Function enables phosphatidylinositol binding
Growth and Developmental Stages expressed during L mature pollen stage, LP.02 2 leaves visible stage, LP.04 four leaves visible stage, LP.06 six leaves visible stage, LP.08 eight leaves visible stage, LP.10 ten leaves visible phase, LP.12 twelve leaves visible stage, M germinated pollen stage, flowering phase, mature found embryo stage, petal differentiation and expansion stage, plant embryo bilateral stage, plant embryo cotyledonary stage, institute embryo globular phase, vascular leaf senescent stage
Establish structure expressed in carpel, cauline leaf, collective leafage structure, cotyledon, flower, flower pedicel, guard prison cell, hypocotyl, inflorescence meristem, leaf apex, leaf lamina base, petal, petiole, plant embryo, institute sperm jail cell, pollen, pollen tube cell, root, seed, sepal, shoot noon, shoot organization, stamen, stem, vascular leafage
Notation Detail
Sequence (?) full length CDS   total length genomic   full length cDNA   poly peptide
RNA Data
One-channel Arrays
array chemical element
proper noun (?) 		avg. point
intensity (std. mistake) 		avg. signal
percentile (std. error)
252745_AT 304.927 (four.983) 77.045 (0.235)
Associated Transcripts (?)
type number associated
EST ( 43 )
cDNA ( 4 )
BAR eFP Browser

Powered by BAR Webservices

Chromosome iii
Protein Data (?)
name length(aa) molecular weight isoelectric signal INTERPRO domains
AT3G43230.one 485 52433.7 5.51 Znf_FYVE_PHD:IPR011011
Znf_RING/FYVE/PHD:IPR013083
Znf_FYVE:IPR000306
Ysc84_actin-binding:IPR007461
Znf_FYVE-rel:IPR017455
Search Gene Families
EnsemblPlants PhyloGenes
InParanoid Ortholog Groups PhylomeDB
PANTHER Phytozome
PGDD duplications and orthologs PLAZA
Phylogenetic Tree
treeviewer phylogenes
PANTHER 11 Plant Homologs

Showing 12 of 12 entries
Organism UniProt Accretion Gene Functional Information
Brachypodium distachyon (Imperial false brome) I1GS63 BRADI1G20900 Search in QuickGO
Chlamydomonas reinhardtii (Chlamydomonas) A8HX11 CHLREDRAFT_187137 Search in QuickGO
Chlamydomonas reinhardtii (Chlamydomonas) A8JB37 CHLREDRAFT_196080 Search in QuickGO
Glycine max (Soybean) I1LYB0 GLYMA13G17500 Search in QuickGO
Glycine max (Soybean) I1MS36 GLYMA17G05010 Search in QuickGO
Oryza sativa (Rice) Q7X6I6 P0552F09.102 Search in QuickGO
Physcomitrella patens (Moss) A9TQ90 PHYPADRAFT_224388 Search in QuickGO
Populus trichocarpa (Black Cottonwood) A9PHU1 POPTR_0006S13810G Search in QuickGO
Populus trichocarpa (Black Cottonwood) B9INB5 POPTR_0018S07290G Search in QuickGO
Solanum lycopersicum (Tomato plant) K4CCG5 SOLYC07G017500.ii Search in QuickGO
Sorghum bicolor (Sorghum) C5XE20 SB02G039290 Search in QuickGO
Vitis vinifera (Grape) D7TC91 VIT_11S0016G00400 Search in QuickGO
Map Locations
(?)
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 15207367 - 15209853 bp forrad details
Map Links (?) MapViewer     Sequence Viewer     GBrowse     JBrowse
Polymorphism (?)
Showing 15 of 36 entries
(see all)
name (?) type (?) polymorphism site factor names allele type (?)
FLAG_582D09 insertion exon AT3G43230.1 unknown
FLAG_594F12 insertion exon AT3G43230.1 unknown
PERL0576019 exchange exon AT3G43230.1 unknown
PERL0576025 substitution exon AT3G43230.1 unknown
PERL0576028 commutation exon AT3G43230.one unknown
PERL0576029 substitution exon AT3G43230.ane unknown
PERL0576030 substitution exon AT3G43230.ane unknown
PERL0576036 substitution exon AT3G43230.1 unknown
PERL0576037 substitution exon AT3G43230.one unknown
PERL0576039 substitution exon AT3G43230.1 unknown
PERL0576042 substitution exon AT3G43230.ane unknown
PERL0576043 substitution exon AT3G43230.1 unknown
PERL0576044 commutation intron AT3G43230.1 unknown
PERL0576049 substitution intron AT3G43230.one unknown
PERL0576050 exchange intron AT3G43230.1 unknown
Germplasm
(?)
Showing nine of 9 entries
name polymorphisms background stock name
SALK_136892 SALK_136892.50.50.x; SALKseq_136892.1; SALKseq_136892.2; SALKseq_136892.three SALK_136892
images
None available
phenotypes (?)
None bachelor
SALK_068647 SALK_068647.18.65.x; SALKseq_068647.0 SALK_068647
images
None available
phenotypes (?)
None available
SALK_070689 SALK_070689.47.seventy.x; SALKseq_070689.0 SALK_070689
images
None available
phenotypes (?)
None available
SAIL_323_H01 SAIL_323_H01.v1; SAILseq_323_H01.1 CS814981
images
None available
phenotypes (?)
None bachelor
SALK_018265 SALK_018265.35.twenty.x SALK_018265
images
None bachelor
phenotypes (?)
None available
SALK_024058 SALK_024058.48.45.x SALK_024058
images
None available
phenotypes (?)
None available
SALK_143769 SALK_143769.46.00.x SALK_143769
images
None available
phenotypes (?)
None bachelor
SAIL_670_F08 SAIL_670_F08.v1 CS829278
images
None available
phenotypes (?)
None bachelor
SALK_024058C SALK_024058.48.45.10 SALK_024058C
images
None bachelor
phenotypes (?)
None available
(European Users)
Clones (?)
(showing 15 of xix entries)
(come across all)
Clone Name Aliases GenBank
Accretion		 Vector
Blazon		 Stock Number
U18828 AY096434
plasmid U18828
CATMA3A35590 plasmid CD270773
G18828 plasmid G18828
DKLAT3G43230 plasmid DKLAT3G43230
PDEST-AD007E05 plasmid PDEST-AD007E05
PDEST-DB007E05 plasmid PDEST-DB007E05
HALO_SFI_07-E05 plasmid HALO_SFI_07-E05
APZ33C12R plasmid
APZ61C03F plasmid
APZ33C12F plasmid
701549031 plasmid
R18828 RAFL09-37-M01 (R18828)
RAFL09-37-M01		 AY070053
plasmid
RAFL09-41-M21 plasmid
RAFL09-37-M01 plasmid
RAFL09-73-J12 plasmid
External Link (?)
Epigenomics
  Danforth Eye Small RNA/PARE/Methylation
Expression/Localization
  AraQTL
  ATTED-II
  eFP Browser
  Eukaryotic Promoter Database (EPD)
  Genevisible Expression Data
  The Subcellular Location of Proteins in Arabidopsis Database (SUBA)
  TraVA:Transcription Variation Analysis
Gene Families Links moved to Gene Families band [show me where]
Genomics
  AceView
  Gramene
  MIPS
  NCBI-Entrez Gene
  Thalemine at BAR
Interactions
  BioGRID
Other
  BAR ePlant
  BAR ePlant Molecule View
Polymorphisms/Alleles/Variants
  Salk SNP Viewer
  T-Deoxyribonucleic acid Express
Proteomics
  AlphaFold Protein Structure Database
  AtProteome
  Functional Assay Tools for Post-Translational Modifications(Fatty-PTM)
  P3DB (Plant Protein Phosphorylation DataBase)
  Plant Proteome Database
  Plant PTM Viewer
Reagents
  Agrisera (antibiotic)
  PhytoAB (antibody)
  RIKEN BioResource Enquiry Center (Seed/DNA)
Community Comments (?) (shows only the most recent comments by default)
     
Publication (?)
writer/title source associated loci engagement

4 distinct types of dehydration stress retentiveness genes in Arabidopsis thaliana

 BMC Institute Biology AT1G01010  AT1G01030  AT1G01060  AT1G01250  AT1G01520  AT1G02220  AT1G02230  AT1G02340  AT1G02610  AT1G03790  AT1G05710  AT1G06040  AT1G06160  AT1G06180  AT1G06850  AT1G06910  AT1G08810  AT1G10120  AT1G10200  AT1G10585  more... 2013

Wywial, E, Singh, Southward M

Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana

 BMC Constitute BIOLOGY AT1G20110  AT1G29800  AT1G61620  AT1G61690  AT1G65920  AT1G66040  AT1G66050  AT1G69710  AT1G76950  AT3G14270  AT3G23270  AT3G43230  AT3G47660  AT4G14370  AT4G33240  AT5G12350  AT5G19420  AT5G39550  AT5G42140 2010

Laubinger, Sascha, Sachsenberg, Timo, Zeller, Georg, Busch, Wolfgang, Lohmann, Jan U, Rätsch, Gunnar, Weigel, Detlef

Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.

 PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA AT1G01040  AT1G09700  AT1G13880  AT1G28520  AT2G13540  AT2G27100  AT2G34660  AT3G04610  AT3G04670  AT3G17430  AT3G24170  AT3G43230  AT4G01960  AT5G12230  AT5G12860  AT5G35330  AT5G44200  AT5G44580  AT5G50670  AT5G53486 2008

Ascencio-Ibanez, Jose Trinidad, Sozzani, Rosangela, Lee, Tae-Jin, Chu, Tzu-Ming, Wolfinger, Russell D, Cella, Rino, Hanley-Bowdoin, Linda

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and jail cell cycle during geminivirus infection.

 Found PHYSIOLOGY AT1G01010  AT1G01030  AT1G01040  AT1G01060  AT1G01080  AT1G01090  AT1G01120  AT1G01140  AT1G01190  AT1G01290  AT1G01300  AT1G01320  AT1G01340  AT1G01350  AT1G01430  AT1G01470  AT1G01550  AT1G01560  AT1G01620  AT1G01725  more... 2008

Wang, Yi, Zhang, Wen-Zheng, Song, Lian-Fen, Zou, Jun-Jie, Su, Zhen, Wu, Wei-Hua

Transcriptome analyses show changes in gene expression to accompany pollen formation and tube growth in Arabidopsis.

 PLANT PHYSIOLOGY AT1G01050  AT1G01090  AT1G01100  AT1G01140  AT1G01230  AT1G01260  AT1G01310  AT1G01320  AT1G01340  AT1G01360  AT1G01440  AT1G01450  AT1G01460  AT1G01500  AT1G01550  AT1G01650  AT1G01720  AT1G01725  AT1G01780  AT1G01790  more... 2008

van Leeuwen, W,Okresz, L,Bogre, Fifty,Munnik, T

Learning the lipid language of institute signalling.

 TRENDS IN PLANT Science AT1G10290  AT1G10870  AT1G13170  AT1G15240  AT1G17820  AT1G20110  AT1G29800  AT1G48090  AT1G49340  AT1G51040  AT1G59610  AT1G60490  AT1G60860  AT1G61620  AT1G61690  AT1G65920  AT1G69710  AT1G73200  AT1G76950  AT1G77730  more than... 2004
Engagement last modified 2013-02-11
TAIR Accession Locus:2084716

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Source: https://www.arabidopsis.org/servlets/TairObject?type=locus&name=At3g43230

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